PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01148.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 219aa    MW: 23672.8 Da    PI: 9.3706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01148.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-202473255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a++ ++g
  Rsa1.0_01148.1_g00004.1 24 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAARDFRG 73
                             59*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-322482IPR001471AP2/ERF domain
CDDcd000183.63E-332482No hitNo description
PROSITE profilePS5103224.1052481IPR001471AP2/ERF domain
SMARTSM003803.5E-372487IPR001471AP2/ERF domain
PfamPF008471.2E-132473IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-222481IPR016177DNA-binding domain
PRINTSPR003671.0E-112536IPR001471AP2/ERF domain
PRINTSPR003671.0E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAKICLKPDP VTPNPIHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
ARAYDKAARD FRGAKAKTNF PNFLELNEKL TSGGGGFARS PSQSSTLDYA SPPAAVTPAT  120
DGIVQPQLEL SLGGGACYHI PTARPLYFLD LMGIGNGVRG QLPLSSAFRS PVMHVSTKMA  180
CGAHSDSDSS SVVDSEGGME RRSQPLYLDL NLLPPAEQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-212081163ATERF1
3gcc_A9e-212081163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895301e-129AC189530.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638190.11e-117PREDICTED: ethylene-responsive transcription factor 4
RefseqXP_013693056.11e-117PREDICTED: ethylene-responsive transcription factor 4
SwissprotO803401e-100ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0D3CJZ71e-117A0A0D3CJZ7_BRAOL; Uncharacterized protein
STRINGscaffold_301765.11e-110(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-89ethylene responsive element binding factor 4